EMILI LAB

(members only)

Databases & Links

LINKS

Yeast proteome

 

Yeast membrane

Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae. Babu et al. (2012)

 

Yeast tap

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Krogan et al. (2006)

 

Mouse proteome

 

Mouse heart

Comparative Proteomics Profiling of a Phospholamban Mutant Mouse Model of Dilated Cardiomyopathy Reveals Progressive Intracellular Stress. Gramolini et al. (2008)

 

Mouse tissue

Global Survey of Organ and Organelle Protein Expression in Mouse: Combined Proteomic and Transcriptomic Profiling. Kislinger et al. (2006)

 

E. coli proteome

 

Membrane proteins

Global Landscape of Membrane Protein Complexes in Escherichia coli. Babu et al. (2016)

  • Website (pending submission)

  • PubMed pending submission)

 

eMaps

Protein Synthesis

Systematic Genetic Screens Reveal the Dynamic Global Functional Organization of the Bacterial Translation Machinery. Gagarinova et al. (2016)

 

Cell Envelope

Genetic interaction maps in Escherichia coli reveal functional crosstalk among cell envelope biogenesis pathways. Babu et al. (2011)

 

eSGA

Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli. Babu et al. (2014)

 

Soluble proteins eNet

Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins. Hu et al. (2009)

 

Human Soluble Protein Complexes

A census of human soluble protein complexes. Havugimana et al. (2012)

 

Metazoan complexes

Panorama of ancient metazoan macromolecular complexes. Wan et al. (2015)

Legacy websites:

PROJECT DATABASES

1. Systematic Genetic Screens Reveal the Dynamic Global Functional Organization of the Bacterial Translation Machinery. Gagarinova et al. (2016)

PubMed:       27732863

BioGRID:      pending

2. Global phosphoproteomic profiling reveals perturbed signaling in a mouse model of dilated cardiomyopathy. Kuzmanov et al. (2016) 

PubMed:       27742792

PRIDE:          PXD004810

3. Phosphoproteomic network analysis in the sea urchin Strongylocentrotus purpuratus reveals new candidates in egg activation. Guo et al. (2015)

PubMed:       26227301

PRIDE:          PXD002239

4. Panorama of ancient metazoan macromolecular complexes. Wan et al. (2015)

PubMed:       26344197

BioGRID:      185267

PRIDE:          PXD002319 , PXD002320 , PXD002321 , PXD002322 , PXD002323 , PXD002324 , PXD002325 , PXD002326 , PXD002327 , PXD002328

 

5. Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli. Babu et al. (2014)

PubMed:       24586182

BioGRID:      188434

6. A census of human soluble protein complexes. Havugimana et al. (2012)

PubMed:       22939629

BioGRID:      142063

7. Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae. Babu et al. (2012)

PubMed:       22940862

BioGRID:      142229

8. Genetic interaction maps in Escherichia coli reveal functional crosstalk among cell envelope biogenesis pathways. Babu et al. (2011)

PubMed:       22125496

BioGRID:      188433